ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6y32C1 - ECOD Domain | ECOD

ECOD/Domains/e6y32C1

e6y32C1

UID: 002674322

PDB

Range: C:91-296
PDB: 6Y32 chain C(all domains)
UniProt: P61011 (all domains)
Gene: SRP54

Molecule: Signal recognition particle 54 kDa protein

3D Structure

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Related Domains

Browse other domains in SRP54 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilySRP54(2004.1.1.43)

Ligands

in contact, ≤ 4 Å

Phosphoaminophosphonic acid guanylate esterGNP
drugDrugBank DB02082
Magnesium ionMG
metal

+ 1 additive (Sulfate ion)

Pfam Families

SRP54-type protein, GTPase domain

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 6Y32 RCSB PDB: 6Y32 PDBe: 6Y32 UniProt: P61011

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sulfate ionSO4

DrugBank DB14546within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.