ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6ydmA1 - ECOD Domain | ECOD

ECOD/Domains/e6ydmA1

e6ydmA1

UID: 002674664

PDB

Range: A:1-219
PDB: 6YDM chain A(all domains)
UniProt: P71447 (all domains)
Gene: pgmB

Molecule: Beta-phosphoglucomutase

3D Structure

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Related Domains

Browse other domains in Hydrolase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHAD domain-like(2006)

HH-groupHAD domain-related(2006.1)

TT-groupHAD-like(2006.1.1)

FFamilyHydrolase(2006.1.1.1)

Ligands

in contact, ≤ 4 Å

1,3-PropanediolPDO
drugDrugBank DB02774
Magnesium ionMG
metal

+ 2 additives (Acetate, Citric acid)

Pfam Families

PF00702Hydrolase

haloacid dehalogenase-like hydrolase

ClanCL0137HAD

External Links

ECOD PDB View: 6YDM RCSB PDB: 6YDM PDBe: 6YDM UniProt: P71447

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

AcetateACT

DrugBank DB14511

Citric acidCIT

DrugBank DB04272

Shown in the structure viewer. Drug annotations from DrugDomain.