ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1amuB1 - ECOD Domain | ECOD

ECOD/Domains/e1amuB1

e1amuB1

UID: 000026940

PDB

Range: B:347-427
PDB: 1AMU chain B(all domains)
UniProt: P0C061 (all domains)
Gene: grsA

Molecule: GRAMICIDIN SYNTHETASE 1

3D Structure

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Related Domains

Browse other domains in AMP-binding →

Classification

AArchitecturebeta barrels(a.1)

XX-groupbeta-barrel domain in acetyl-CoA synthetase-like proteins(4011)

HH-groupbeta-barrel domain in acetyl-CoA synthetase-like proteins(4011.1)

TT-groupbeta-barrel domain in acetyl-CoA synthetase-like proteins(4011.1.1)

FFamilyAMP-binding(4011.1.1.1)

Ligands

in contact, ≤ 4 Å

Adenosine phosphateAMP
drugDrugBank DB00131
Magnesium ionMG
metalwithin 5 Å only

+ 1 additive (Sulfate ion)

Pfam Families

PF00501AMP-binding

AMP-binding enzyme

ClanCL0378ANL

External Links

ECOD PDB View: 1AMU RCSB PDB: 1AMU PDBe: 1AMU UniProt: P0C061

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sulfate ionSO4

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.