ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7by6A2 - ECOD Domain | ECOD

ECOD/Domains/e7by6A2

e7by6A2

UID: 002697003

PDB

Range: A:296-569
PDB: 7BY6 chain A(all domains)
UniProt: A5K9S0 (all domains)
Gene: PVX_081300

Molecule: Phenylalanyl-tRNA synthetase beta chain, putative

3D Structure

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Related Domains

Browse other domains in tRNA-synt_2d →

Classification

AArchitecturea+b three layers(a.12)

XX-groupClass II aaRS and biotin synthetases(314)

HH-groupClass II aaRS and biotin synthetases(314.1)

TT-groupClass II aaRS and biotin synthetases(314.1.1)

FFamilytRNA-synt_2d(314.1.1.3)

Ligands

in contact, ≤ 4 Å

(3S,4R,8R,9R,10S)-N-(4-cyclopropyloxyphenyl)-10-(methoxymethyl)-3,4-bis(oxidanyl)-9-[4-(2-phenylethynyl)phenyl]-1,6-diazabicyclo[6.2.0]decane-6-carboxamideFB9
Magnesium ionMG
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01409tRNA-synt_2d

tRNA synthetases class II core domain (F)

ClanCL0040tRNA_synt_II

External Links

ECOD PDB View: 7BY6 RCSB PDB: 7BY6 PDBe: 7BY6 UniProt: A5K9S0

Downloads

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