ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6l6yF1 - ECOD Domain | ECOD

ECOD/Domains/e6l6yF1

e6l6yF1

UID: 002697177

PDB

Range: F:62-141
PDB: 6L6Y chain F(all domains)
UniProt: Q61473 (all domains)
Gene: Sox17

Molecule: Transcription factor SOX-17

3D Structure

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Related Domains

Browse other domains in HMG_box →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHMG-box-like(190)

HH-groupHMG-box(190.1)

TT-groupHMG-box(190.1.1)

FFamilyHMG_box(190.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00505HMG_box

HMG (high mobility group) box

ClanCL0114HMG-box

External Links

ECOD PDB View: 6L6Y RCSB PDB: 6L6Y PDBe: 6L6Y UniProt: Q61473

Downloads

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