ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7b60B1 - ECOD Domain | ECOD

ECOD/Domains/e7b60B1

e7b60B1

UID: 002701047

PDB

Range: B:105-338
PDB: 7B60 chain B(all domains)
UniProt: P22188 (all domains)
Gene: murE

Molecule: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase

3D Structure

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Related Domains

Browse other domains in Mur_ligase_M →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyMur_ligase_M(2004.1.1.159)

Ligands

in contact, ≤ 4 Å

4-[(furan-2-yl)methyl]-1lambda~6~,4-thiazinane-1,1-dioneO3D

+ 2 additives (Dimethyl sulfoxide, Isopropyl alcohol)

Dimethyl sulfoxideDMS
DrugBank DB01093
Isopropyl alcoholIPA

Pfam Families

PF08245Mur_ligase_M

Mur ligase middle domain

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 7B60 RCSB PDB: 7B60 PDBe: 7B60 UniProt: P22188

Downloads

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DrugBank DB02325

Shown in the structure viewer. Drug annotations from DrugDomain.