ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7b6kB2 - ECOD Domain | ECOD

ECOD/Domains/e7b6kB2

e7b6kB2

UID: 002701085

PDB

Range: B:105-338
PDB: 7B6K chain B(all domains)
UniProt: P22188 (all domains)
Gene: murE

Molecule: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase

3D Structure

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Related Domains

Browse other domains in Mur_ligase_M →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyMur_ligase_M(2004.1.1.159)

Ligands

in contact, ≤ 4 Å

5-cyclohexyl-3-(pyridin-4-yl)-1,2,4-oxadiazoleSZ2

+ 2 additives (Citric acid, Dimethyl sulfoxide)

Citric acidCIT
DrugBank DB04272
Dimethyl sulfoxideDMS

Pfam Families

PF08245Mur_ligase_M

Mur ligase middle domain

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 7B6K RCSB PDB: 7B6K PDBe: 7B6K UniProt: P22188

Downloads

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DrugBank DB01093

Shown in the structure viewer. Drug annotations from DrugDomain.