ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7bf5C1 - ECOD Domain | ECOD

ECOD/Domains/e7bf5C1

e7bf5C1

UID: 002701188

PDB

Range: C:0-171
PDB: 7BF5 chain C(all domains)
UniProt: P0DTD1 (all domains)
Gene: rep

Molecule: NSP3 macrodomain

3D Structure

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Related Domains

Browse other domains in Macro →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupMacro domain-like(7529)

HH-groupMacro domain-like(7529.1)

TT-groupMacro domain-like(7529.1.1)

FFamilyMacro(7529.1.1.1)

Ligands

in contact, ≤ 4 Å

[(2R,3R,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3-HYDROXY-4-(PHOSPHONOOXY)TETRAHYDROFURAN-2-YL]METHYL [(2R,3S,4R,5R)-3,4,5-TRIHYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATEA2R
Magnesium ionMG
metal

+ 1 additive (1,2-ETHANEDIOL)

Pfam Families

Macro domain

ClanCL0223MACRO

External Links

ECOD PDB View: 7BF5 RCSB PDB: 7BF5 PDBe: 7BF5 UniProt: P0DTD1

Downloads

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1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.