ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7cdbA1 - ECOD Domain | ECOD

ECOD/Domains/e7cdbA1

e7cdbA1

UID: 002701927

PDB

Range: A:-4-117
PDB: 7CDB chain A(all domains)
UniProt: Q8R3R8 (all domains)
Gene: Gabarapl1

Molecule: Gamma-aminobutyric acid receptor-associated protein-like 1

3D Structure

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Related Domains

Browse other domains in ATG8 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupbeta-Grasp(221)

HH-groupUbiquitin-related(221.1)

TT-groupUbiquitin-like(221.1.1)

FFamilyATG8(221.1.1.18)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Acetate, Citric acid)

AcetateACT
DrugBank DB14511
Citric acidCIT
DrugBank DB04272

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Autophagy protein Atg8 ubiquitin like

ClanCL0072Ubiquitin

External Links

ECOD PDB View: 7CDB RCSB PDB: 7CDB PDBe: 7CDB UniProt: Q8R3R8

Downloads

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