ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7cdbB1 - ECOD Domain | ECOD

ECOD/Domains/e7cdbB1

e7cdbB1

UID: 002701928

PDB

Range: B:-4-117
PDB: 7CDB chain B(all domains)
UniProt: Q8R3R8 (all domains)
Gene: Gabarapl1

Molecule: Gamma-aminobutyric acid receptor-associated protein-like 1

3D Structure

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Related Domains

Browse other domains in ATG8 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupbeta-Grasp(221)

HH-groupUbiquitin-related(221.1)

TT-groupUbiquitin-like(221.1.1)

FFamilyATG8(221.1.1.18)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Citric acid)

Citric acidCIT
DrugBank DB04272

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Autophagy protein Atg8 ubiquitin like

ClanCL0072Ubiquitin

External Links

ECOD PDB View: 7CDB RCSB PDB: 7CDB PDBe: 7CDB UniProt: Q8R3R8

Downloads

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