ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7kemA1 - ECOD Domain | ECOD

ECOD/Domains/e7kemA1

e7kemA1

UID: 002705826

PDB

Range: A:234-407
PDB: 7KEM chain A(all domains)
UniProt: I6Y9J2 (all domains)
Gene: ldtB

Molecule: L,D-transpeptidase 2

3D Structure

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Related Domains

Browse other domains in YkuD →

Classification

AArchitecturebeta complex topology(a.5)

XX-groupL,D-transpeptidase catalytic domain-like(4091)

HH-groupL,D-transpeptidase catalytic domain-like(4091.1)

TT-groupL,D-transpeptidase catalytic domain-like(4091.1.1)

FFamilyYkuD(4091.1.1.1)

Ligands

in contact, ≤ 4 Å

D-Glutamic AcidDGL
drugDrugBank DB02517
Di-mu-iodobis(ethylenediamine)diplatinum(II)0JC
6-CARBOXYLYSINE6CL

Pfam Families

L,D-transpeptidase catalytic domain

ClanCL0508YkuD

External Links

ECOD PDB View: 7KEM RCSB PDB: 7KEM PDBe: 7KEM UniProt: I6Y9J2

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.