ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7kv2AAA1 - ECOD Domain | ECOD

ECOD/Domains/e7kv2AAA1

e7kv2AAA1

UID: 002706887

PDB

Range: AAA:38-515
PDB: 7KV2 chain AAA(all domains)
UniProt: A0A173VPY3 (all domains)
Gene: DW011_12550

Molecule: RagB/SusD family nutrient uptake outer membrane protein

3D Structure

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Related Domains

Browse other domains in SusD_RagB →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilySusD_RagB(109.4.1.104)

Ligands

in contact, ≤ 4 Å

Sodium ionNA
metal

+ 2 additives (2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 1,2-ETHANEDIOL)

2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOLBTB
1,2-ETHANEDIOLEDO

Pfam Families

PF07980SusD_RagB

SusD family

ClanCL0020TPR

External Links

ECOD PDB View: 7KV2 RCSB PDB: 7KV2 PDBe: 7KV2 UniProt: A0A173VPY3

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.