ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6lj2A1 - ECOD Domain | ECOD

ECOD/Domains/e6lj2A1

e6lj2A1

UID: 002709082

PDB

Range: A:42-270
PDB: 6LJ2 chain A(all domains)
UniProt: C7C422 (all domains)
Gene: blaNDM-1

Molecule: Metallo-beta-lactamase type 2

3D Structure

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Related Domains

Browse other domains in Lactamase_B →

Classification

AArchitecturea+b four layers(a.13)

XX-groupMetallo-hydrolase/oxidoreductase(247)

HH-groupMetallo-hydrolase/oxidoreductase(247.1)

TT-groupMetallo-hydrolase/oxidoreductase(247.1.1)

FFamilyLactamase_B(247.1.1.1)

Ligands

in contact, ≤ 4 Å

Hydroxide ionOH
drugDrugBank DB14522
(1R)-2-[(2S)-2-methyl-3-sulfanyl-propanoyl]-3,4-dihydro-1H-isoquinoline-1-carboxylic acidEEX
(1S)-2-[(2S)-2-methyl-3-sulfanyl-propanoyl]-3,4-dihydro-1H-isoquinoline-1-carboxylic acid

Pfam Families

PF00753Lactamase_B

Metallo-beta-lactamase superfamily

ClanCL0381Metallo-HOrase

External Links

ECOD PDB View: 6LJ2 RCSB PDB: 6LJ2 PDBe: 6LJ2 UniProt: C7C422

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Zinc ionZN

metal

Shown in the structure viewer. Drug annotations from DrugDomain.