ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6lkmB1 - ECOD Domain | ECOD

ECOD/Domains/e6lkmB1

e6lkmB1

UID: 002709118

PDB

Range: B:214-742
PDB: 6LKM chain B(all domains)
UniProt: P23921 (all domains)
Gene: RRM1

Molecule: Ribonucleoside-diphosphate reductase large subunit

3D Structure

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Related Domains

Browse other domains in Ribonuc_red_lgC →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTen stranded beta/alpha barrel(2500)

HH-groupTen stranded beta/alpha barrel(2500.1)

TT-groupTen stranded beta/alpha barrel(2500.1.1)

FFamilyRibonuc_red_lgC(2500.1.1.2)

Ligands

in contact, ≤ 4 Å

Thymidine 5'-triphosphateTTP
drugDrugBank DB02452
5-chloro-N-((1S,2R)-2-(6-fluoro-2,3-dimethylphenyl)-1-(5-oxo-4,5-dihydro-1,3,4-oxadiazol-2-yl)propyl)-4-methyl-3,4-dihydro-2H-benzo[b][1,4]oxazine-8-sulfonamideEJ6

Pfam Families

PF02867Ribonuc_red_lgC

Ribonucleotide reductase, barrel domain

ClanCL0339PFL-like

External Links

ECOD PDB View: 6LKM RCSB PDB: 6LKM PDBe: 6LKM UniProt: P23921

Downloads

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Magnesium ion

metal

Shown in the structure viewer. Drug annotations from DrugDomain.