ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6lqgC1 - ECOD Domain | ECOD

ECOD/Domains/e6lqgC1

e6lqgC1

UID: 002709405

PDB

Range: C:2-244
PDB: 6LQG chain C(all domains)
UniProt: Q96BI3 (all domains)
Gene: APH1A

Molecule: Gamma-secretase subunit APH-1A

3D Structure

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Related Domains

Browse other domains in Aph-1 →

Classification

AArchitecturealpha bundles(a.7)

XX-groupIntramembrane protease Rce1-related(1076)

HH-groupIntramembrane protease Rce1-related(1076.1)

TT-groupIntramembrane protease Rce1-related(1076.1.1)

FFamilyAph-1(1076.1.1.2)

Ligands

in contact, ≤ 4 Å

CholesterolCLR
drugDrugBank DB04540
N-AcetylglucosamineNAG
drugDrugBank DB00141within 5 Å only

Pfam Families

Aph-1 protein

ClanCL0472Peptidase_U

External Links

ECOD PDB View: 6LQG RCSB PDB: 6LQG PDBe: 6LQG UniProt: Q96BI3

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINEPC1

Shown in the structure viewer. Drug annotations from DrugDomain.