ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ry8A1 - ECOD Domain | ECOD

ECOD/Domains/e5ry8A1

e5ry8A1

UID: 002711133

PDB

Range: A:397-718
PDB: 5RY8 chain A(all domains)
UniProt: Q92835 (all domains)
Gene: INPP5D

Molecule: Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1

3D Structure

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Related Domains

Browse other domains in Exo_endo_phos2 →

Classification

AArchitecturea+b four layers(a.13)

XX-groupCarbon-nitrogen hydrolase-like(246)

HH-groupDNase I-like(246.3)

TT-groupDNase I-like(246.3.1)

FFamilyExo_endo_phos2(246.3.1.4)

Ligands

in contact, ≤ 4 Å

[1-(4-chlorophenyl)-1,2,3-triazol-4-yl]methanolB1J
MANGANESE (II) IONMN
metalwithin 5 Å only

+ 3 additives (Dimethyl sulfoxide, Phosphate ion, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL)

Dimethyl sulfoxide

Pfam Families

PF22669Exo_endo_phos2

Endonuclease/Exonuclease/phosphatase family 2

ClanCL0530DNase_I-like

External Links

ECOD PDB View: 5RY8 RCSB PDB: 5RY8 PDBe: 5RY8 UniProt: Q92835

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB01093

Phosphate ionPO4

DrugBank DB14523

2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOLBTB

Shown in the structure viewer. Drug annotations from DrugDomain.