ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5s71B2 - ECOD Domain | ECOD

ECOD/Domains/e5s71B2

e5s71B2

UID: 002711550

PDB

Range: B:189-346
PDB: 5S71 chain B(all domains)
UniProt: P0DTD1 (all domains)
Gene: rep

Molecule: Uridylate-specific endoribonuclease

3D Structure

Loading viewer...

Related Domains

Browse other domains in CoV_NSP15_C →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupRNase A-like(372)

HH-groupEndoU-like(372.2)

TT-groupEndoU-like(372.2.1)

FFamilyCoV_NSP15_C(372.2.1.2)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Citric acid)

Citric acidCIT
DrugBank DB04272

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF19215CoV_NSP15_C

Coronavirus replicase NSP15, uridylate-specific endoribonuclease

ClanCL0695EndoU

External Links

ECOD PDB View: 5S71 RCSB PDB: 5S71 PDBe: 5S71 UniProt: P0DTD1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure