ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6tiiAAA3 - ECOD Domain | ECOD

ECOD/Domains/e6tiiAAA3

e6tiiAAA3

UID: 002712027

PDB

Range: AAA:255-327,AAA:460-612
PDB: 6TII chain AAA(all domains)
UniProt: A0A5P8YJF3 (all domains)

Molecule: Peptidoglycan D,D-transpeptidase MrdA

3D Structure

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Related Domains

Browse other domains in Transpeptidase →

Classification

AArchitecturea+b three layers(a.12)

XX-groupProfilin-like(223)

HH-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3)

TT-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3.1)

FFamilyTranspeptidase(223.3.1.3)

Ligands

in contact, ≤ 4 Å

Bromide ionBR
within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00905Transpeptidase

Penicillin binding protein transpeptidase domain

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 6TII RCSB PDB: 6TII PDBe: 6TII UniProt: A0A5P8YJF3

Downloads

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