ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6tixBBB4 - ECOD Domain | ECOD

ECOD/Domains/e6tixBBB4

e6tixBBB4

UID: 002712061

PDB

Range: BBB:328-459
PDB: 6TIX chain BBB(all domains)
UniProt: A0A5P8YJF3 (all domains)

Molecule: Peptidoglycan D,D-transpeptidase MrdA

3D Structure

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Related Domains

Browse other domains in Transpeptidase →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019)

HH-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019.1)

TT-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019.1.1)

FFamilyTranspeptidase(4019.1.1.3)

Ligands

in contact, ≤ 4 Å

2-[(1R)-1-{[(E)-azepan-1-ylmethylidene]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acidDH4

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00905Transpeptidase

Penicillin binding protein transpeptidase domain

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 6TIX RCSB PDB: 6TIX PDBe: 6TIX UniProt: A0A5P8YJF3

Downloads

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