ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6vkaB1 - ECOD Domain | ECOD

ECOD/Domains/e6vkaB1

e6vkaB1

UID: 002713586

PDB

Range: B:57-210
PDB: 6VKA chain B(all domains)
UniProt: F2WR39 (all domains)
Gene: pol

Molecule: Integrase

3D Structure

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Related Domains

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Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyrve(2484.1.1.9)

Ligands

in contact, ≤ 4 Å

Iodide ionIOD
2,2'-{ethane-1,2-diylbis[oxyethane-2,1-diylcarbamoyl-4,1-phenyleneethyne-2,1-diyl(5-methyl-1-benzofuran-2,3-diyl)]}diacetic acidQZV

+ 1 additive (Sulfate ion)

Sulfate ionSO4

Pfam Families

Integrase core domain

ClanCL0219RNase_H

External Links

ECOD PDB View: 6VKA RCSB PDB: 6VKA PDBe: 6VKA UniProt: F2WR39

Downloads

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DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.