ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6wmtD2 - ECOD Domain | ECOD

ECOD/Domains/e6wmtD2

e6wmtD2

UID: 002715048

PDB

Range: D:332-375,D:416-496
PDB: 6WMT chain D(all domains)
UniProt: Q2A1M8 (all domains)
Gene: rpoC

Molecule: DNA-directed RNA polymerase subunit beta'

3D Structure

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Related Domains

Browse other domains in RNA_pol_Rpb1_2 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupdouble psi(1.1.2)

FFamilyRNA_pol_Rpb1_2(1.1.2.2)

Ligands

in contact, ≤ 4 Å

GUANOSINE-5',3'-TETRAPHOSPHATEG4P
Magnesium ionMG
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00623RNA_pol_Rpb1_2

RNA polymerase Rpb1, domain 2

External Links

ECOD PDB View: 6WMT RCSB PDB: 6WMT PDBe: 6WMT UniProt: Q2A1M8

Downloads

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