ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6xdsA2 - ECOD Domain | ECOD

ECOD/Domains/e6xdsA2

e6xdsA2

UID: 002716406

PDB

Range: A:2-111,A:260-369
PDB: 6XDS chain A(all domains)
UniProt: Q9NZC2 (all domains)
Gene: TREM2

Molecule: Sugar ABC transporter substrate-binding protein,Triggering receptor expressed on myeloid cells 2

3D Structure

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Related Domains

Browse other domains in SBP_bac_1 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilySBP_bac_1(7523.1.1.8)

Ligands

in contact, ≤ 4 Å

2-[(4-bromophenyl)amino]ethan-1-olV5S

+ 1 additive (Dimethyl sulfoxide)

Dimethyl sulfoxideDMS

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01547SBP_bac_1

Bacterial extracellular solute-binding protein

ClanCL0177PBP

External Links

ECOD PDB View: 6XDS RCSB PDB: 6XDS PDBe: 6XDS UniProt: Q9NZC2

Downloads

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