ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6xxgAAA3 - ECOD Domain | ECOD

ECOD/Domains/e6xxgAAA3

e6xxgAAA3

UID: 002717588

PDB

Range: AAA:8-318
PDB: 6XXG chain AAA(all domains)
UniProt: Q9RUB5 (all domains)
Gene: dxs

Molecule: 1-deoxy-D-xylulose-5-phosphate synthase,1-deoxy-D-xylulose-5-phosphate synthase

3D Structure

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Related Domains

Browse other domains in DXP_synthase_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupThiamin diphosphate-binding fold (THDP-binding)(7574)

HH-groupThiamin diphosphate-binding fold (THDP-binding)(7574.1)

TT-groupThiamin diphosphate-binding fold (THDP-binding)(7574.1.1)

FFamilyDXP_synthase_N(7574.1.1.11)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
Magnesium ionMG
metal
Thiamine diphosphateTPP

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF13292DXP_synthase_N

1-deoxy-D-xylulose-5-phosphate synthase

ClanCL0254THDP-binding

External Links

ECOD PDB View: 6XXG RCSB PDB: 6XXG PDBe: 6XXG UniProt: Q9RUB5

Downloads

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