ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6y0aA1 - ECOD Domain | ECOD

ECOD/Domains/e6y0aA1

e6y0aA1

UID: 002717738

PDB

Range: A:-2-362
PDB: 6Y0A chain A(all domains)
UniProt: P49336 (all domains)
Gene: CDK8

Molecule: Cyclin-dependent kinase 8

3D Structure

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Related Domains

Browse other domains in Pkinase →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupProtein kinase/SAICAR synthase/ATP-grasp(206)

HH-groupProtein kinase/SAICAR synthase/ATP-grasp(206.1)

TT-groupProtein kinase(206.1.1)

FFamilyPkinase(206.1.1.1)

Ligands

in contact, ≤ 4 Å

6-[5-chloranyl-4-[(1~{S})-1-oxidanylethyl]pyridin-3-yl]-3,4-dihydro-2~{H}-1,8-naphthyridine-1-carboxamideJRE

+ 2 additives (Formic acid, 1,2-ETHANEDIOL)

Formic acidFMT
DrugBank DB01942
1,2-ETHANEDIOL

Pfam Families

PF00069Pkinase

Protein kinase domain

ClanCL0016PKinase

External Links

ECOD PDB View: 6Y0A RCSB PDB: 6Y0A PDBe: 6Y0A UniProt: P49336

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.