ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6y8yA3 - ECOD Domain | ECOD

ECOD/Domains/e6y8yA3

e6y8yA3

UID: 002717929

PDB

Range: A:426-567
PDB: 6Y8Y chain A(all domains)
UniProt: A0A6P3VN15 (all domains)
Gene: pgm5

Molecule: Phosphoglucomutase 5

3D Structure

Loading viewer...

Related Domains

Browse other domains in PGM1_C_vert_fung →

Classification

AArchitecturea+b two layers(a.11)

XX-groupTBP-like(331)

HH-groupPhosphoglucomutase, C-terminal domain(331.2)

TT-groupPhosphoglucomutase, C-terminal domain(331.2.1)

FFamilyPGM1_C_vert_fung(331.2.1.7)

Ligands

in contact, ≤ 4 Å

alpha-D-glucose-1-phosphateG1P
drugDrugBank DB02843
Calcium ionCA
metal
Sodium ion

Pfam Families

PF24947PGM1_C_vert_fung

Phosphoglucomutase-1, C-terminal domain

ClanCL0407TBP-like

External Links

ECOD PDB View: 6Y8Y RCSB PDB: 6Y8Y PDBe: 6Y8Y UniProt: A0A6P3VN15

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 1 additive (Glycerol)

GlycerolGOL

Shown in the structure viewer. Drug annotations from DrugDomain.