ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6yabAAA1 - ECOD Domain | ECOD

ECOD/Domains/e6yabAAA1

e6yabAAA1

UID: 002718009

PDB

Range: AAA:127-268
PDB: 6YAB chain AAA(all domains)
UniProt: A0A0H2UPF3 (all domains)
Gene: SP_0845

Molecule: Lipoprotein

3D Structure

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Related Domains

Browse other domains in Bmp →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupPeriplasmic binding protein-like I(2007.1.2)

FFamilyBmp(2007.1.2.5)

Ligands

in contact, ≤ 4 Å

UridineURI
drugDrugBank DB02745

+ 1 additive (Acetate)

AcetateACT
DrugBank DB14511within 5 Å only

Shown in the structure viewer.

Pfam Families

ABC transporter substrate-binding protein PnrA-like

ClanCL0144Periplas_BP

External Links

ECOD PDB View: 6YAB RCSB PDB: 6YAB PDBe: 6YAB UniProt: A0A0H2UPF3

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Drug annotations from DrugDomain.