ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6yagD2 - ECOD Domain | ECOD

ECOD/Domains/e6yagD2

e6yagD2

UID: 002718020

PDB

Range: D:5-126,D:268-332
PDB: 6YAG chain D(all domains)
UniProt: A0A0H2UPF3 (all domains)
Gene: SP_0845

Molecule: Lipoprotein

3D Structure

Loading viewer...

Related Domains

Browse other domains in Bmp →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupPeriplasmic binding protein-like I(2007.1.2)

FFamilyBmp(2007.1.2.5)

Ligands

in contact, ≤ 4 Å

ThymidineTHM
drugDrugBank DB04485
NICKEL (II) IONNI
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

ABC transporter substrate-binding protein PnrA-like

ClanCL0144Periplas_BP

External Links

ECOD PDB View: 6YAG RCSB PDB: 6YAG PDBe: 6YAG UniProt: A0A0H2UPF3

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure