ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6yakAAA1 - ECOD Domain | ECOD

ECOD/Domains/e6yakAAA1

e6yakAAA1

UID: 002718029

PDB

Range: AAA:-1-280
PDB: 6YAK chain AAA(all domains)

Molecule: N-terminal component of the split chain transketolase

3D Structure

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Related Domains

Browse other domains in Transketolase_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupThiamin diphosphate-binding fold (THDP-binding)(7574)

HH-groupThiamin diphosphate-binding fold (THDP-binding)(7574.1)

TT-groupThiamin diphosphate-binding fold (THDP-binding)(7574.1.1)

FFamilyTransketolase_N(7574.1.1.1)

Ligands

in contact, ≤ 4 Å

2-[3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-2H-1,3-thiazol-5-yl]ethyl phosphono hydrogen phosphate8EL
Calcium ionCA
metal
Chloride ionCL
(2S)-2-hydroxybutanedioic acidLMR

+ 1 additive (D-malate)

D-malate

Pfam Families

PF00456Transketolase_N

Transketolase, thiamine diphosphate binding domain

ClanCL0254THDP-binding

External Links

ECOD PDB View: 6YAK RCSB PDB: 6YAK PDBe: 6YAK

Downloads

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