ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6ye7B1 - ECOD Domain | ECOD

ECOD/Domains/e6ye7B1

e6ye7B1

UID: 002718129

PDB

Range: B:136-276
PDB: 6YE7 chain B(all domains)
UniProt: P31133 (all domains)
Gene: potF

Molecule: Putrescine-binding periplasmic protein

3D Structure

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Related Domains

Browse other domains in SBP_bac_6 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilySBP_bac_6(7523.1.1.26)

Ligands

in contact, ≤ 4 Å

CadaverineN2P
drugDrugBank DB03854

+ 2 additives (Malonate Ion, 1,2-ETHANEDIOL)

Malonate IonMLI
DrugBank DB02201

Pfam Families

PF13343SBP_bac_6

Bacterial extracellular solute-binding protein

ClanCL0177PBP

External Links

ECOD PDB View: 6YE7 RCSB PDB: 6YE7 PDBe: 6YE7 UniProt: P31133

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-ETHANEDIOL

Shown in the structure viewer. Drug annotations from DrugDomain.