ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6yirA3 - ECOD Domain | ECOD

ECOD/Domains/e6yirA3

e6yirA3

UID: 002718214

PDB

Range: A:2-235
PDB: 6YIR chain A(all domains)
UniProt: P94360 (all domains)
Gene: msmX

Molecule: Oligosaccharides import ATP-binding protein MsmX

3D Structure

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Related Domains

Browse other domains in ABC_tran →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyABC_tran(2004.1.1.5)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Triethylene glycol, Sulfate ion)

Triethylene glycolPGE
DrugBank DB02327
Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00005ABC_tran

ABC transporter

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 6YIR RCSB PDB: 6YIR PDBe: 6YIR UniProt: P94360

Downloads

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