ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6yk9A2 - ECOD Domain | ECOD

ECOD/Domains/e6yk9A2

e6yk9A2

UID: 002718223

PDB

Range: A:2-242
PDB: 6YK9 chain A(all domains)

Molecule: 5,10-methenyltetrahydromethanopterin hydrogenase

3D Structure

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Related Domains

Browse other domains in HMD_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupNAD(P)-binding Rossmann-fold domains(2003.1.1)

FFamilyHMD_N(2003.1.1.83)

Ligands

in contact, ≤ 4 Å

GlycineGLY
drugDrugBank DB00145
5'-O-[(S)-{[2-(carboxymethyl)-6-hydroxy-3,5-dimethylpyridin-4-yl]oxy}(hydroxy)phosphoryl]guanosineFEG

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

HMD N-terminal domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 6YK9 RCSB PDB: 6YK9 PDBe: 6YK9

Downloads

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