ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6ykaB2 - ECOD Domain | ECOD

ECOD/Domains/e6ykaB2

e6ykaB2

UID: 002718233

PDB

Range: B:2-242
PDB: 6YKA chain B(all domains)

Molecule: 5,10-methenyltetrahydromethanopterin hydrogenase

3D Structure

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Related Domains

Browse other domains in HMD_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupNAD(P)-binding Rossmann-fold domains(2003.1.1)

FFamilyHMD_N(2003.1.1.83)

Ligands

in contact, ≤ 4 Å

iron-guanylyl pyridinol cofactorFE9

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

HMD N-terminal domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 6YKA RCSB PDB: 6YKA PDBe: 6YKA

Downloads

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