ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6yp7R1 - ECOD Domain | ECOD

ECOD/Domains/e6yp7R1

e6yp7R1

UID: 002718525

PDB

Range: R:11-232
PDB: 6YP7 chain R(all domains)

Molecule: Light harvesting chlorophyll a/b-binding protein Lhcb4.3

3D Structure

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Related Domains

Browse other domains in Chloroa_b-bind →

Classification

AArchitectureextended segments(a.20)

XX-groupChlorophyll a-b binding protein(5077)

HH-groupChlorophyll a-b binding protein(5077.1)

TT-groupChlorophyll a-b binding protein(5077.1.1)

FFamilyChloroa_b-bind(5077.1.1.1)

Ligands

in contact, ≤ 4 Å

Chlorophyll bCHL
Chlorophyll aCLA
1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLELHG
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDELMG
(3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOLLUT
(1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL

Pfam Families

PF00504Chloroa_b-bind

Chlorophyll A-B binding protein

External Links

ECOD PDB View: 6YP7 RCSB PDB: 6YP7 PDBe: 6YP7

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOLXAT

Shown in the structure viewer.