ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6yx5A1 - ECOD Domain | ECOD

ECOD/Domains/e6yx5A1

e6yx5A1

UID: 002718918

PDB

Range: A:3-175
PDB: 6YX5 chain A(all domains)
UniProt: P61006 (all domains)
Gene: RAB8A

Molecule: Ras-related protein Rab-8A

3D Structure

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Related Domains

Browse other domains in Ras →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyRas(2004.1.1.19)

Ligands

in contact, ≤ 4 Å

Phosphoaminophosphonic acid guanylate esterGNP
drugDrugBank DB02082
alpha-D-glucopyranoseGLC
[(2~{R},3~{S},4~{R},5~{R})-5-[4-(acetamidomethyl)-1,2,3-triazol-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate

Pfam Families

Ras family

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 6YX5 RCSB PDB: 6YX5 PDBe: 6YX5 UniProt: P61006

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Magnesium ionMG

metal

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.