ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6yyjB1 - ECOD Domain | ECOD

ECOD/Domains/e6yyjB1

e6yyjB1

UID: 002718940

PDB

Range: B:1-172
PDB: 6YYJ chain B(all domains)
UniProt: P50033 (all domains)
Gene: cpcB

Molecule: C-phycocyanin beta chain

3D Structure

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Related Domains

Browse other domains in Phycobilisome →

Classification

AArchitecturealpha arrays(a.6)

XX-groupGlobin-like(106)

HH-groupGlobin-like(106.1)

TT-groupGlobin-like(106.1.1)

FFamilyPhycobilisome(106.1.1.2)

Ligands

in contact, ≤ 4 Å

3-[5-[[(3~{R},4~{R})-3-ethyl-4-methyl-5-oxidanylidene-3,4-dihydropyrrol-2-yl]methyl]-2-[[5-[(~{Z})-(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{H}-pyrrol-2-yl]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acidPXQ

+ 2 additives (2-(N-morpholino)ethanesulfonic acid, Triethylene glycol)

2-(N-morpholino)ethanesulfonic acidMES

Pfam Families

PF00502Phycobilisome

Phycobilisome protein

ClanCL0090Globin

External Links

ECOD PDB View: 6YYJ RCSB PDB: 6YYJ PDBe: 6YYJ UniProt: P50033

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB03814

Triethylene glycolPGE

DrugBank DB02327

Shown in the structure viewer. Drug annotations from DrugDomain.