ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6yjiA2 - ECOD Domain | ECOD

ECOD/Domains/e6yjiA2

e6yjiA2

UID: 002721342

PDB

Range: A:231-499
PDB: 6YJI chain A(all domains)
UniProt: I1RWY4 (all domains)
Gene: FG08824.1

Molecule: FAD-binding PCMH-type domain-containing protein

3D Structure

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Related Domains

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Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupFAD-linked oxidases, C-terminal domain(304.6)

TT-groupFAD-linked oxidases, C-terminal domain(304.6.1)

FFamilyBBE(304.6.1.3)

Ligands

in contact, ≤ 4 Å

Flavin adenine dinucleotideFAD
drugDrugBank DB03147
N-AcetylglucosamineNAG
drugDrugBank DB00141

Pfam Families

Berberine and berberine like

ClanCL0277FAD-oxidase_C

External Links

ECOD PDB View: 6YJI RCSB PDB: 6YJI PDBe: 6YJI UniProt: I1RWY4

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Chloride ion

Thiocyanate ionSCN

+ 1 additive (Pentaethylene glycol)

Pentaethylene glycol1PE

Shown in the structure viewer. Drug annotations from DrugDomain.