ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6xruB1 - ECOD Domain | ECOD

ECOD/Domains/e6xruB1

e6xruB1

UID: 002721684

PDB

Range: B:1-245
PDB: 6XRU chain B(all domains)
UniProt: P53590 (all domains)
Gene: SUCLG2

Molecule: Succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial

3D Structure

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Related Domains

Browse other domains in ATP-grasp_2 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupProtein kinase/SAICAR synthase/ATP-grasp(206)

HH-groupProtein kinase/SAICAR synthase/ATP-grasp(206.1)

TT-groupATP-grasp(206.1.3)

FFamilyATP-grasp_2(206.1.3.20)

Ligands

in contact, ≤ 4 Å

Succinic acidSIN
drugDrugBank DB00139
Magnesium ionMG
metal

+ 2 additives (Glycerin, 1,2-ETHANEDIOL)

Pfam Families

PF08442ATP-grasp_2

ATP-grasp domain

ClanCL0179ATP-grasp

External Links

ECOD PDB View: 6XRU RCSB PDB: 6XRU PDBe: 6XRU UniProt: P53590

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Glycerin

DrugBank DB09462

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.