ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6xruB2 - ECOD Domain | ECOD

ECOD/Domains/e6xruB2

e6xruB2

UID: 002721685

PDB

Range: B:246-393
PDB: 6XRU chain B(all domains)
UniProt: P53590 (all domains)
Gene: SUCLG2

Molecule: Succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial

3D Structure

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Related Domains

Browse other domains in Ligase_CoA →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupSuccinyl-CoA synthetase domains(2007.3)

TT-groupSuccinyl-CoA synthetase domains(2007.3.1)

FFamilyLigase_CoA(2007.3.1.1)

Ligands

in contact, ≤ 4 Å

Desulfo-coenzyme ADCA
drugDrugBank DB01829
Succinic acidSIN
drugDrugBank DB00139
Magnesium ion

Pfam Families

PF00549Ligase_CoA

CoA-ligase

ClanCL0506Succ_CoA_synth

External Links

ECOD PDB View: 6XRU RCSB PDB: 6XRU PDBe: 6XRU UniProt: P53590

Downloads

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metal

+ 2 additives (Glycerin, Phosphate ion)

GlycerinGOL
DrugBank DB09462
Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.