ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7c0kB1 - ECOD Domain | ECOD

ECOD/Domains/e7c0kB1

e7c0kB1

UID: 002721883

PDB

Range: B:127-276
PDB: 7C0K chain B(all domains)
UniProt: Q5SLB4 (all domains)
Gene: TTHA0379

Molecule: Sugar ABC transporter, periplasmic sugar-binding protein

3D Structure

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Related Domains

Browse other domains in SBP_bac_8 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilySBP_bac_8(7523.1.1.28)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
[(1S,3R,3aR,6aS)-3-(2-azanyl-6-oxidanylidene-1H-purin-9-yl)-5,5-bis(oxidanyl)-1,3,3a,4,6,6a-hexahydrocyclopenta[c]furan-1-yl]methyl [(2R,3S,4R,5R)-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-2-(hydroxymethyl)-4-oxidanyl-oxolan-3-yl] hydrogen phosphateFGO

+ 3 additives (Carbonate ion, Glycerin, 1,2-ETHANEDIOL)

Pfam Families

PF13416SBP_bac_8

Bacterial extracellular solute-binding protein

ClanCL0177PBP

External Links

ECOD PDB View: 7C0K RCSB PDB: 7C0K PDBe: 7C0K UniProt: Q5SLB4

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Carbonate ionCO3

DrugBank DB14531

GlycerinGOL

DrugBank DB09462

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.