ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6w4rA2 - ECOD Domain | ECOD

ECOD/Domains/e6w4rA2

e6w4rA2

UID: 002722055

PDB

Range: A:162-350
PDB: 6W4R chain A(all domains)
UniProt: Q9NUW8 (all domains)
Gene: TDP1

Molecule: Tyrosyl-DNA phosphodiesterase 1

3D Structure

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Related Domains

Browse other domains in Tyr-DNA_phospho →

Classification

AArchitecturea+b three layers(a.12)

XX-groupPhospholipase D/nuclease(300)

HH-groupPhospholipase D/nuclease(300.1)

TT-groupPhospholipase D/nuclease(300.1.1)

FFamilyTyr-DNA_phospho(300.1.1.3)

Ligands

in contact, ≤ 4 Å

3-(N-morpholino)propanesulfonic acidMPO
drugDrugBank DB03434
4-{[2-(2-hydroxyphenyl)imidazo[1,2-a]pyrazin-3-yl]amino}benzene-1,2-dicarboxylic acidSZV

+ 1 additive (1,2-ETHANEDIOL)

Pfam Families

PF06087Tyr-DNA_phospho

Tyrosyl-DNA phosphodiesterase

ClanCL0479PLD

External Links

ECOD PDB View: 6W4R RCSB PDB: 6W4R PDBe: 6W4R UniProt: Q9NUW8

Downloads

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1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.