ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6zclA1 - ECOD Domain | ECOD

ECOD/Domains/e6zclA1

e6zclA1

UID: 002722129

PDB

Range: A:13-281
PDB: 6ZCL chain A(all domains)
UniProt: P03313 (all domains)

Molecule: capsid protein VP1

3D Structure

Loading viewer...

Related Domains

Browse other domains in Rhv_5 →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyRhv_5(10.2.1.69)

Ligands

in contact, ≤ 4 Å

4-[[4-[1,3-bis(oxidanylidene)isoindol-2-yl]phenyl]sulfonylamino]benzoic acidFHK

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Picornavirus coat protein

ClanCL0055Nucleoplasmin

External Links

ECOD PDB View: 6ZCL RCSB PDB: 6ZCL PDBe: 6ZCL UniProt: P03313

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure