ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6y4mB1 - ECOD Domain | ECOD

ECOD/Domains/e6y4mB1

e6y4mB1

UID: 002722791

PDB

Range: B:244-431
PDB: 6Y4M chain B(all domains)
UniProt: P02554 (all domains)

Molecule: Tubulin beta chain

3D Structure

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Related Domains

Browse other domains in Tubulin_C →

Classification

AArchitecturea+b three layers(a.12)

XX-groupBacillus chorismate mutase-like(301)

HH-groupTubulin C-terminal domain-like(301.6)

TT-groupTubulin C-terminal domain-like(301.6.1)

FFamilyTubulin_C(301.6.1.1)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-TriphosphateGTP
drugDrugBank DB04137
Magnesium ionMG
metal
(2~{S},4~{R})-4-azanyl-2-methyl-5-phenyl-pentanoic acid

Pfam Families

PF03953Tubulin_C

Tubulin C-terminal domain

ClanCL0442Tubulin_C

External Links

ECOD PDB View: 6Y4M RCSB PDB: 6Y4M PDBe: 6Y4M UniProt: P02554

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 2 additives (2-(N-morpholino)ethanesulfonic acid, Triethylene glycol)

2-(N-morpholino)ethanesulfonic acidMES
DrugBank DB03814
Triethylene glycolPGE
DrugBank DB02327

Shown in the structure viewer. Drug annotations from DrugDomain.