ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6yhjL1 - ECOD Domain | ECOD

ECOD/Domains/e6yhjL1

e6yhjL1

UID: 002723515

PDB

Range: L:-1-15
PDB: 6YHJ chain L(all domains)
UniProt: P00734 (all domains)
Gene: F2

Molecule: Prothrombin

3D Structure

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Related Domains

Browse other domains in Thrombin_light →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupFMN-binding split barrel(1.1.5)

FFamilyThrombin_light(1.1.5.27)

Ligands

in contact, ≤ 4 Å

(2~{S})-1-[(2~{R})-2-azanyl-3-phenyl-propanoyl]-~{N}-[(5-chloranylthiophen-2-yl)methyl]pyrrolidine-2-carboxamideOQZ

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF09396Thrombin_light

Thrombin light chain

External Links

ECOD PDB View: 6YHJ RCSB PDB: 6YHJ PDBe: 6YHJ UniProt: P00734

Downloads

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