ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6ympH1 - ECOD Domain | ECOD

ECOD/Domains/e6ympH1

e6ympH1

UID: 002723964

PDB

Range: H:16-246
PDB: 6YMP chain H(all domains)
UniProt: P00734 (all domains)
Gene: F2

Molecule: Prothrombin

3D Structure

Loading viewer...

Related Domains

Browse other domains in Trypsin →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupFMN-binding split barrel 2(1.1.17)

FFamilyTrypsin(1.1.17.1)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141
3-[(5-tert-butyl-1,2-oxazol-3-yl)methyl]oxetan-3-amineD6Y
Sodium ionNA

Pfam Families

PF00089Trypsin

Trypsin

ClanCL0124Peptidase_PA

External Links

ECOD PDB View: 6YMP RCSB PDB: 6YMP PDBe: 6YMP UniProt: P00734

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 2 additives (Dimethyl sulfoxide, Phosphate ion)

Dimethyl sulfoxideDMS
DrugBank DB01093
Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.