ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7agbB2 - ECOD Domain | ECOD

ECOD/Domains/e7agbB2

e7agbB2

UID: 002725824

PDB

Range: B:1-181
PDB: 7AGB chain B(all domains)
UniProt: B8YPM3 (all domains)
Gene: SAPP1

Molecule: Candidapepsin

3D Structure

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Related Domains

Browse other domains in Asp →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyAsp(1.1.1.1)

Ligands

in contact, ≤ 4 Å

Sodium ionNA
metal

+ 3 additives (2-(N-morpholino)ethanesulfonic acid, Triethylene glycol, 3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL)

2-(N-morpholino)ethanesulfonic acidMES
DrugBank DB03814
Triethylene glycolPGE

Pfam Families

Eukaryotic aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 7AGB RCSB PDB: 7AGB PDBe: 7AGB UniProt: B8YPM3

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB02327

3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOLPE3

Shown in the structure viewer. Drug annotations from DrugDomain.