ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7benE1 - ECOD Domain | ECOD

ECOD/Domains/e7benE1

e7benE1

UID: 002726786

PDB

Range: E:337-493
PDB: 7BEN chain E(all domains)
UniProt: P0DTC2 (all domains)
Gene: S

Molecule: Spike glycoprotein

3D Structure

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Related Domains

Browse other domains in bCoV_S1_RBD →

Classification

AArchitecturea+b three layers(a.12)

XX-groupCoronavirus spike protein receptor-binding domain(4169)

HH-groupCoronavirus spike protein receptor-binding domain(4169.1)

TT-groupBeta-coronavirus spike protein receptor-binding domain(4169.1.1)

FFamilybCoV_S1_RBD(4169.1.1.1)

Ligands

in contact, ≤ 4 Å

Bromide ionBR
within 5 Å only

+ 2 additives (Glycerin, Imidazole)

GlycerinGOL
DrugBank DB09462
Imidazole

Pfam Families

PF09408bCoV_S1_RBD

Betacoronavirus spike glycoprotein S1, receptor binding

External Links

ECOD PDB View: 7BEN RCSB PDB: 7BEN PDBe: 7BEN UniProt: P0DTC2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB03366

Shown in the structure viewer. Drug annotations from DrugDomain.