ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7kz9B1 - ECOD Domain | ECOD

ECOD/Domains/e7kz9B1

e7kz9B1

UID: 002731267

PDB

Range: B:27-60,B:164-264,B:476-503
PDB: 7KZ9 chain B(all domains)
UniProt: A0A1H3V8R8 (all domains)

Molecule: Peptide/nickel transport system substrate-binding protein AapF

3D Structure

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Related Domains

Browse other domains in SBP_bac_5 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilySBP_bac_5(7523.1.1.3)

Ligands

in contact, ≤ 4 Å

N,N~2~-bis(2-hydroxyethyl)glycinamideXN7

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL
DrugBank DB09462
Sulfate ionSO4

Pfam Families

PF00496SBP_bac_5

Bacterial extracellular solute-binding proteins, family 5 Middle

ClanCL0177PBP

External Links

ECOD PDB View: 7KZ9 RCSB PDB: 7KZ9 PDBe: 7KZ9 UniProt: A0A1H3V8R8

Downloads

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