ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7lo6C1 - ECOD Domain | ECOD

ECOD/Domains/e7lo6C1

e7lo6C1

UID: 002731957

PDB

Range: C:33-123,C:197-255,C:474-503
PDB: 7LO6 chain C(all domains)
UniProt: Q2N0S6 (all domains)
Gene: env

Molecule: Envelope glycoprotein BG505 SOSIP.664 gp120

3D Structure

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Related Domains

Browse other domains in GP120 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupgp120 inner domain(1061)

HH-groupgp120 inner domain(1061.1)

TT-groupgp120 inner domain(1061.1.1)

FFamilyGP120(1061.1.1.1)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141
~{N}'-[(1~{R},2~{R})-2-(carbamimidamidomethyl)-5-(methylaminomethyl)-2,3-dihydro-1~{H}-inden-1-yl]-~{N}-(4-chloranyl-3-fluoranyl-phenyl)ethanediamide5VG

Shown in the structure viewer.

Pfam Families

Envelope glycoprotein GP120

External Links

ECOD PDB View: 7LO6 RCSB PDB: 7LO6 PDBe: 7LO6 UniProt: Q2N0S6

Downloads

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Drug annotations from DrugDomain.