ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7md7251 - ECOD Domain | ECOD

ECOD/Domains/e7md7251

e7md7251

UID: 002733032

PDB

Range: 25:2-60
PDB: 7MD7 chain 25(all domains)
UniProt: P80339 (all domains)
Gene: rpmF

Molecule: 50S ribosomal protein L32

3D Structure

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Related Domains

Browse other domains in Ribosomal_L32p →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRubredoxin-like(375)

HH-groupRubredoxin-related(375.1)

TT-groupRubredoxin-related(375.1.1)

FFamilyRibosomal_L32p(375.1.1.14)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal
Zinc ionZN
metal
N-[(1R,2R)-1,3-dihydroxy-1-(4-nitrophenyl)propan-2-yl]-5-(triphenyl-lambda~5~-phosphanyl)pentanamideYXM

Pfam Families

PF01783Ribosomal_L32p

Ribosomal L32p protein family

ClanCL0167Zn_Beta_Ribbon

External Links

ECOD PDB View: 7MD7 RCSB PDB: 7MD7 PDBe: 7MD7 UniProt: P80339

Downloads

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within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.