ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7nbhDDD2 - ECOD Domain | ECOD

ECOD/Domains/e7nbhDDD2

e7nbhDDD2

UID: 002733156

PDB

Range: DDD:164-325
PDB: 7NBH chain DDD(all domains)
UniProt: Q9GZT4 (all domains)
Gene: SRR

Molecule: Serine racemase

3D Structure

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Related Domains

Browse other domains in PALP →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupTryptophan synthase beta subunit-like PLP-dependent enzymes(2003.4)

TT-groupTryptophan synthase beta subunit-like PLP-dependent enzymes(2003.4.1)

FFamilyPALP(2003.4.1.1)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
Magnesium ionMG
metal
Sodium ionNA

Pfam Families

Pyridoxal-phosphate dependent enzyme

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 7NBH RCSB PDB: 7NBH PDBe: 7NBH UniProt: Q9GZT4

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

N-[(1H-benzimidazol-2-yl)methyl]furan-2-carboxamideW0D

+ 3 additives (Glycerin, 1,2-ETHANEDIOL, Triethylene glycol)

GlycerinGOL
DrugBank DB09462
1,2-ETHANEDIOLEDO
Triethylene glycolPGE

Shown in the structure viewer. Drug annotations from DrugDomain.